Abastabar, M., Mirhendi, H., Hedayati, M.T., Shokohi, T., Rezaei-Matehkolaei, A., Mohammadi, R., Badali, H., Moazeni, M., Haghani, I., Ghojoghi, A. & Akhtari, J. 2016. Genetic and morphological diversity of the genus Penicillium from Mazandaran and Tehran provinces, Iran. Jundishapur Journal of Microbiology 9(1): https://doi.org/10.5812/jjm.28280.
Abbasi, R., Ghosta, Y. & Abrinbana, M. 2019. Species diversity of endophytic fungi in the family Aspergillaceae from Pear trees in Urmia. The 2nd. International & 6th. National Conference on Organic and Conventional Agriculture, 25 Aug., University of Mohaghegh Ardabili, Ardabil, Iran.
Abdel-Rahim, I.R. & Abo-Elyousr, K.A.M. 2018. Talaromyces pinophilus strain AUN-1 as a novel mycoparasite of Botrytis cinerea, the pathogen of onion scape and umbel blights. Microbiological Research 212–213: 1–9.
Abri, T.K., Sengin, E.L. & Sjahrir, R. 2015. Production of indole acetic acid (IAA) hormone from fungal isolates collected from rhizosphere of aromatic rice in Tana Toraja. International Journal of Current Research in Biosciences and Plant Biology 2: 198–201.
Ahmadi, K., Ebadzadeh, H., Hatami, F., Abdshah, H. & Kazemian, A. 2020. Annual Agricultural Statistics of Iran (2018–2019), Vol. I. Crops. Ministry of Agriculture, Planning and Economic Deputy, Information Technology Center, Tehran, Iran.
Alagesaboopathi, C. 1994. Biological control of damping-off disease of cotton seedling. Current Science 66: 865–868.
Allen, C.J., Mackay, M.J., Aylward, J.H. & Campbell, J.A. 1997. New technologies for sugar milling and by-product modification. Pp. 267–285. In: Intensive Sugarcane Production: Meeting the Challenges Beyond 2000 (Keating, B.A. & Wilson, J.R., eds). CAB International, Wallingford, UK.
Al-Nur, E.-A. & Abdulmoneim, M.A. 2007. Contribution to the knowledge of soil fungi in Sudan rhizosphere mycoflora of sugarcane at Kenana sugar estate. International Journal of Botany 3: 97–102.
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403–410.
Anelli, P., Peterson, S.W., Haidukowski, M., Logriecoa, A.F., Morettia, A., Epifania, F. & Susca, A. 2018. Penicillium gravinicasei, a new species isolated from cave cheese in Apulia, Italy. International Journal of Food Microbiology 282: 66–70.
Asgari, B., Zare, R., Taherkhani, K., Bakhshi, M., Javadi, A., Zangeneh, S. & Moazen, H. 2019. Biodiversity of non-mycorrhizal fungi of sugarcane rhizosphere in selected fields of Khuzestan province. 4th. Iranian Mycological Congress, 26–28 Aug., Sari Agricultural Sciences and Natural Resources University, Iran: 27.
Benjamin, C.R. 1995. Ascocarps of Aspergillus and Penicillium. Mycologia 47: 669–687.
Berendsen, R.L., Pieterse, M.J.C. & Bakker, A.H.M. 2012. The rhizosphere micro biome and plant health. Trends in Plant Science 17: 478–486.
Biourge, P. 1923. Les moisissures du groupe Penicillium. Cellule 33: 7–331.
Cenis, J.L. 1992. Rapid extraction of fungal DNA for PCR amplification. Nucleic Acids Research 20: 23–80.
Chandrashekar, M.A., Soumya, P.K. & Raju, N.S. 2014. Fungal diversity of rhizosphere soils in different agricultural fields of Nanjangud Taluk of Mysore district, Karnataka, India. International Journal of Current Microbiology and Applied Sciences 3: 559–566.
Coutinho, F.P., Cavalcanti, M.A.Q. & Yano-Melo, A.M. 2010. Filamentous fungi isolated from the rhizosphere of melon plants (Cucumis melo L. cv. Gold Mine) cultivated in soil with organic amendments. Botânica Brasílica 24: 292–298.
Cox, M., Hogarth, M. & Smith, G. 2000. Cane breeding and improvement. Pp. 91–108. In: Manual of Cane Growing. (Hogarth, M. & Allsopp, P., eds). Bureau of Sugar Experimental Stations, Indooroopilly, Australia.
Crous, P.W., Wingfield, M.J., Burgess, T.I., Carnegie, A.J., Hardy, G.S., Smith, D., Summerell, B.A., Cano-Lira, J.F., Guarro, J., Houbraken, J. & Lombard, L. 2017. Fungal planet description sheets 625–715. Persoonia 39: 460–461.
Davolos, D., Pietrangeli, B., Persiani, A.M. & Maggi, O. 2012. Penicillium simile sp. nov. revealed by morphological and phylogenetic analysis. International Journal of Systematic and Evolutionary Microbiology 62: 451–458.
Delshad, D. & Mostowfizadeh-Ghalamfarsa, R. 2020. Identification of Penicillium species from citrus fruits and various bread types in Shiraz (Iran). Rostaniha 21(1): 65–78.
Deshmukh, R.B., Dange, S.S., Jadhav, P.V., Deokule, S.S. & Patil, N.A. 2013. Studies on the mycoflora in the rhizosphere of sugarcane (Saccharum officinarum L.). International Journal of Bioassays 2: 674–676.
Dierckx, R.P. 1901. Un essai de revision du genre Penicillium Link. Annals de Societe de Sciences Bruxelles 25: 83–89.
Dijksterhuis, J. 2007. Heat resistant ascospores. Pp. 101–117. In: Food Mycology. A Multifaceted Approach to Fungi and Food (Dijksterhuis, J. & Samson, R.A., eds). CRC Press, Boca Raton.
Domsch, K.H., Gams, W. & Anderson, T-H. 2007. Compendium of Soil Fungi (2nd ed). IHW Verlag, Eching bei München, Germany.
Dong, H.Z. & Cohen, Y. 2002. Dry mycelium of Penicillium chrysogenum induces resistance against Verticillium wilt and enhances growth of cotton plants. Phytoparasitica 30: 147–157.
Ershad, D. 2009. Fungi of Iran. Iranian Research Institute of Plant Protection, Tehran, Iran.
Fahima, T. & Henis, Y. 1997. Increasing of Trichoderma hamatum and Talaromyces flavus on root of healthy and useful hosts. Pp. 296–322. In: Biological Control of Soil-Borne Plant Pathogens (Hornby, D., ed.). CAB International, Wallingford, UK.
Fleming, A. 1929. On the antibacterial action of cultures of a Penicillium, with special reference to their use in the isolation of B. influenzae. British Journal of Experimental Pathology 10: 226–236.
Fraga, M.E., Pereira, M.G., Barbosa, D.J. & Melo, M.P. 2010. Diversity of isolated Trichocomaceae from soil in two forest ecosystems. Ciência Florestal 20: 167–175.
Frisvad, J.C. & Samson, R.A. 2004. Polyphasic taxonomy of Penicillium subgenus Penicillium. A guide to identification of food and air-borne terverticillate Penicillia and their mycotoxins. Studies in Mycology 49: 1–174.
Frisvad, J.C. 1981. Physiological criteria and mycotoxin production as aids in identification of common asymmetric Penicillia. Applied and Environmental Microbiology 41: 568–579.
Frisvad, J.C., Smedsgaard, J., Larsen, T.O. & Samson, R.A. 2004. Mycotoxins, drugs and other extrolites produced by species in Penicillium subgenus Penicillium. Studies in Mycology 49: 201–241.
Gams, W., Hoekstra, E.S. & Aptroot, A. (eds). 1998. CBS Course of Mycology (4th. ed.). CBS, Baarn, the Neherlands.
Ghaemmaghami, S.S. & Balali, G.R. 2012. Using pectic zymogram technique to identify interspecies variation of some Penicillium species. Iranian Journal of Biology 26(4): 524–531.
Ghosh, S.K., Banerjee, S. & Sengupta, C. 2017. Bioassay, characterization and estimation of siderophores from some important antagonistic Fungi. Journal of Biofertilizers & Biopesticides 10: 105–112.
Glass, N.L. & Donaldson, G.C. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61: 1323–1330.
Gohel, V., Singh, A., Vimal, M., Ashwini, P. & Chhatpar, H.S. 2006. Bioprospecting and antifungal potential of chitinolytic microorganisms. African Journal of Biotechnology 5: 54–72.
Gomez, E.R., Pioli, R. & Conti, M. 2007. Fungal abundance and distribution as influenced by clearing and land use in a vertic soil of Argentina. Biology and Fertility Soils 43: 373–377.
Hiltner, L. 1904. Über neuere Erfahrungen und Probleme auf dem Gebiete der Bodenbakteriologie unter besonderer Berücksichtigung der Gründüngung und Brache. Arbeiten der Deutschen Landwirtschaftlichen Gesellschaft 98: 59–78.
Houbraken, J. & Samson, R.A. 2011. Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Studies in Mycology 70: 1–51.
Houbraken, J., Frisvad, J.C. & Samson, R.A. 2010. Taxonomy of Penicillium citrinum and related species. Fungal Diversity 44: 117–133.
Houbraken, J., Frisvad, J.C. & Samson, R.A. 2011. Taxonomy of Penicillium section Citrina. Studies in Mycology 70: 53–138.
Houbraken, J., Frisvad, J.C., Seifert, K.A, Overy, D.P., Tuthill, D.M., Valdez, J.G. & Samson, R.A. 2012. New penicillin-producing Penicillium species and an overview of section Chrysogena. Persoonia 29: 78–100.
Houbraken, J., Kocsubé, S., Visagie, C.M., Yilmaz, N., Wang, X.C., Meijer, M., Kraak, B., Hubka, V., Bensch, K., Samson, R.A. &Frisvad, J.C. 2020. Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species. Studies in Mycology 95: 5–169.
Houbraken, J., Visagie, C.M., Meijer, M., Frisvad, J.C., Busby, P.E., Pitt, J.I., Seifert, K.A., Louis-Seize, G., Demirel, R., Yilmaz, N. & Jacobs, K. 2014. A taxonomic and phylogenetic revision of Penicillium section Aspergilloides. Studies in Mycology 78: 373–451.
Houbraken, J., Wang, L., Lee, H.B. & Frisvad, J.C. 2016. New sections in Penicillium containing novel species producing patulin, pyripyropens or other bioactive compounds. Persoonia 36: 299–314.
Hyakumachi, M. 1994. Plant-growth-promoting fungi from turfgrass rhizosphere with potential for disease suppression. Soil Microorganisms 44: 53–68.
Jogaiah, S., Abdelrahman, M., Tran, L.S.P. & Shin-ichi, I. 2013. Characterization of rhizosphere fungi that mediate resistance in tomato against bacterial wilt disease. Journal of Experimental Botany 64: 3829–3842.
Johnson, L.F., Curl, E.A., Bond, J.H. & Fribourg, H.A. 1960. Methods for Studying Soil Mycoflora: Plant Disease Relationships. Burgress Publishing Co., Minneapolis, USA.
Juma, E.O.A., Musyimi, D.M. & Opande, G. 2018. Enumeration and identification of rhizospheric microorganisms of sugarcane variety co 421 in Kibos, Kisumu County, Kenya. Journal of Asian Scientific Research 8: 113–127.
Karahadian, C., Josephson, D.B. & Lindsay, R.C. 1985. Volatile compounds from Penicillium sp. contributing musty-earthy notes to Brie and Camembert cheese flavors. Journal of Agricultural and Food Chemistry 33: 339–343.
Khalmuratova, I., Kim, H., Nam, Y.J., Oh, Y., Jeong, M.J., Choi, H.R., You, Y.H., Choo, Y.S., Lee, I.J., Shin, J.H., Yoon, H. & Kim, J.G. 2015. Diversity and plant growth promoting capacity of endophytic fungi associated with halophytic plants from the west coast of Korea. Mycobiology 43: 373–383.
Khan, S.A., Hamayun, M., Yoon, H., Kim, H.Y., Suh, S.J., Hwang, S.K., Kim, J.M., Lee, I.J., Choo, Y.S., Yoon, U.H., Kong, W.-S., Lee, B.M. & Kim, J.-G. 2008. Plant growth promotion and Penicillium citrinum. BMC Microbiology 8: 231. https://doi.org/10.1186/1471-2180-8-231.
Khodaei, A., Arzanlou, M., Babai-Ahari, A. & Houbraken, J. 2015. Five new species of Penicillium and Talaromyces for mycobiota of Iran. Rostaniha 16(2): 186–199.
Khodaei, A., Babai-Ahari, A. & Arzanlou, M. 2017. Incidence of Penicilllium species on grape and raisin in East-, West Azarbaijan and Gazvin provinces. Journal of Applied Research in Plant Protection 6(1): 41–54 (In Persian with English abstract).
Lacey, J. 1988. The microbiology of cereal grains from areas of Iran with a high incidence of oesophageal cancer. Journal of Stored Product Research 24: 39–50.
Link, H.F. 1809. Observationes in Ordines plantarum naturales. Dissertatio 1ma. Magazin der Gesellschaft Naturforschenden Freunde Berlin 3: 3–42.
Ludemann, V., Greco, M., Rodríguez, M.P., Basílicob, J.C. & Pardoc, A.G. 2010. Conidial production by Penicillium nalgiovense for use as starter cultures in dry fermented sausages by solid state fermentation. LWT- Food Science and Technology 43: 315–318.
Mackintosh, D. 2000. Sugar milling. Pp. 369–377. In: Manual of Cane Growing (Hogarth, M. & Allsopp, P., eds). Bureau of Sugar Experiment Stations, Indooroopilly, Australia.
Meera, M.S., Shivanna, M.B., Kageyama, K. & Hyakumachi, M. 1994. Plant growth promoting fungi from zoysiagrass rhizosphere as potential inducers of systemic resistance in cucumbers. Phytopathology 84: 1399–1406.
Murali, M., Naziya, B., Ansari, M.A., Alomary, M.N., AlYahya, S., Almatroudi, A., Thriveni, M.C., Gowtham, H.G., Singh, S.B., Aiyaz, M., Kalegowda, N., Lakshmidevi, N. & Amruthesh, K.N. 2021. Bioprospecting of rhizosphere-resident fungi: Their role and importance in sustainable agriculture. Journal of Fungi 7(4): 314. https://doi.org/10.3390/jof7040314.
Naraghi, L., Heydari, A. & Rezaee, S. 2012. Biocontrol agent Talaromyces flavus stimulates the growth of cotton and potato. Journal of Plant Growth Regulation 31: 471–477.
Naraghi, L., Heydari, A., Rezaee, S., Razavi, M. & Afshari-Azad, H. 2010a. Biological control of Verticillium wilt of greenhouse cucumber by Talaromyces flavus. Phytopathologia Mediterranea 49: 321–329.
Naraghi, L., Heydari, A., Rezaee, S., Razavi, M., Jahanifar, H. & Mahmoodi Khaledi, E. 2010b. Biological control of tomato Verticillium disease by Talaromyces flavus. Journal of Plant Protection Research 50: 360–365.
Nenwani, V., Doshi, P., Saha, T. & Rajkumar, S. 2010. Isolation and characterization of a fungal isolate for phosphate solubilization and plant growth promoting activity. Journal of Yeast and Fungal Research 1: 9–14.
Oh, J.Y., Kim, E.N., Ryoo, M.I. & Kim, K.D. 2008. Morphological and molecular identification of Penicillium islandicum isolate KU101 from stored rice. Plant Pathology Journal 24: 469–473.
Pandey, A., Das, N., Kumar, B., Rinu, K. & Trivedi, P. 2008. Phosphate solubilization by Penicillium spp. isolated from soil samples of Indian Himalayan region. World Journal of Microbiology and Biotechnology 24: 97–102.
Park, M.S., Fong, J.J., Oh, S.-Y., Houbraken, J., Sohn, J.H., Hong, S.-B. & Lim, Y.W. 2015. Penicillium jejuense sp. nov., solated from the marine environments of Jeju Island, Korea. Mycologia 107: 209–216.
Peterson, S.W. & Horn, B.W. 2009. Penicillium parvulum and Penicillium georgiense, sp. nov., isolated from the conidial heads of Aspergillus species. Mycologia 101: 71–83.
Peterson, S.W. & Jurjević, Ž. 2019. The Talaromyces pinophilus species complex. Fungal Biology 123: 745–762.
Pitt, J.I. 1980. [“1979”]. The Genus Penicillium and its Teleomorphic States Eupenicillium and Talaromyces. Acdemic Press, London, UK.
Ramírez, C. 1982. Manual and atlas of the Penicillia. Elsevier Biomedical Press, Amsterdam, the Netherlands.
Ramos, S.M.S., Cruz, R., do Nascimento Barbosa, R., Machado, A.R., da Costa, A.F., de Souza Motta, C.M. & de Oliveira, N.T. 2018. Penicillium and Talaromyces communities of sugarcane soils (Saccharum officinarum L.): Ecological and phylogenetic aspects. Journal of Agricultural Science 10: 335–350.
Raper, K.B. & Thom, C. 1949. A Manual of the Penicillia. The Williams & Wilkins Company, Baltimore, USA.
Raper, K.B., Thom, C. & Fennell, D.I. 1968. A Manual of the Penicillia. Hanfer Publishing Company, New York and London.
Ridgeway, R. 1912. Color Standards and Color Nomenclature. Washington DC, USA.
Romão-Dumaresq, A.S., Dourado, M.N., Lima Fávaro, L.C. de, Mendes, R., Ferreira, A. & Araújo, W.L. 2016. Diversity of cultivated fungi associated with conventional and transgenic sugarcane and the interaction between endophytic Trichoderma virens and the host plant. PLOS ONE 11: https://doi.org/10.1371/journal.pone.0158974.
Romão-Dumaresq, A.S., Junqueira Franco, H.C., Montes Nogueira Borges, B.M., Batista, B.D. & Quecine, M.C. 2017. Beneficial microorganisms associated with sugarcane crops: the green gold for clean energy. Pp. 313–339. In: Diversity and Benefits of Microorganisms from the Tropics (de Azevedo, J.L. & Quecine, M.C., eds). Springer, Switzerland.
Sakai, A., Tanaka, H., Konishi, Y., Hanazawa, R., Ota, T., Nakahara, Y., Sekiguchi, S., Oshida, E., Takino, M., Ichinoe, M., Yoshikawa, K., Yoshizawa, T. & Takatori, K. 2005. Mycological examination of domestic unpolished rice and mycotoxin production by isolated Penicillium islandicum. Journal of the Food Hygienic Society of Japan 46: 205–212.
Samadi, R., Arzanlou, M., Ghosta, Y. & Houbraken, J. 2016. Three Penicillium species new for the mycobiota of Iran from soils of the National Park of Urmia Lake. Rostaniha 17(2): 127–135.
Samson, R.A., Houbraken, J. & Thrane, U. 2010. Food and Indoor Fungi. CBS KNAW Biodiversity Center. Utrecht, the Netherlands.
Samson, R.A., Yilmaz, N., Houbraken, J., Spierenburg, H., Seifert, K.A., Peterson, S.W., Varga, J. & Frisvad, J.C. 2011. Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium. Studies in Mycology 70: 159–183.
Schoch, C.L., Seifert, K.A., Huhndorf. S., Robert, V., Spougea, J.L., Levesque, C.A., Chen, W. & Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proceedings of the National Academy of Sciences of the United States of America 109: 6241–6246.
Seifert, K.A., Samson, R.A., Waard, J.R. de, Houbraken, J., Lévesque, C.A., Moncalvo, J.-M., Louis-Seize, G. & Hebert, P.D.N. 2007. Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case. Proceedings of the National Academy of Sciences of the United States of America 104: 3901–3906.
Shivanna, M.B., Meera, M.S. & Hyakumachi, M. 1994. Sterile fungi from zoysiagrass rhizosphere as plant growth promoters in spring wheat. Canadian Journal of Microbiology 40: 637–644.
Singleton, L.L., Mihail, J.D. & Rush, C.M. 1992. Methods for research on soilborne phytopathogenic fungi. APS Press, St. Paul, Minnesota, USA.
Skouboe, P., Frisvad, J.C., Taylor, J.W., Lauritsen, D., Boysen, M. & Rossen, L. 1999. Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species. Mycological Research 103: 873–881.
Smith, G. 1933. Some new species of Penicillium. Transactions of the British Mycological Society 18: 88–91.
Souza-Motta, C., Cavalcanti, M.A.Q., Fernandes, M.J.S., Lima, D.M.M., Nascimento, J.P. & Laranjeira, D. 2003. Identification and characterization of filamentous fungi isolated from sunflower (Helliantus annus L.) rhizosphere according to their capacity to hidrolyse inulin. Brazilian Journal of Microbiology 34: 273–280.
Stolk, A.C. & Samson, R.A. 1972. The genus Talaromyces studies on Talaromyces and related genera II. Studies in Mycology 2: 1–65.
Sun, B.-D., Chen, A.J., Houbraken, J., Frisvad, J.C., Wu, W.-P., Wei, H.-L., Zhou, Y.-G., Jiang, X.-Z. & Samson, R.A. 2020. New section and species in Talaromyces. MycoKeys 68: 75–113.
Terrasan, C.R.F., Temer, B., Duarte, M.C.T. & Carmona, E.C. 2010. Production of xylanolytic enzymes by Penicillium janczewskii. Bioresource Technology 101: 4139–4143.
Thom, C. 1930. The Penicillia. The Williams & Wilkins Company, Baltimore, USA.
Vardasbi, H., Saremi, H., Fotouhifar, Kh.-B., Kaveh, H. & Javan-Nikkhah, M. 2020. Novel endophytic species of Talaromyces sect. Talaromyces associated with saffron plant to the mycobiota of Iran. Mycologia Iranica 7(2): 219–229.
Visagie, C.M., Houbraken, J., Frisvad, J.C., Hong, S.B., Klaassen, C.H.W., Perrone, G., Seifert, K.A., Varga, J., Yaguchi, T. & Samson, R.A. 2014. Identification and nomenclature of the genus Penicillium. Studies in Mycology 78: 343–371.
Visagie, C.M., Houbraken, J., Seifert, K.A. Samson, R.A. & Jacobs, K. 2015. Four new Penicillium species isolated from the fynbos biome in
South Africa, including a multigene phylogeny of section Lanata-Divaricata. Mycological Progress 14: 96–119.
Wakelin, S.A., Gupta, V.V.S.R., Harvey, P.R. & Ryder, M.H. 2007. The effect of Penicillium fungi on plant growth and phosphorus mobilization in neutral to alkaline soils from southern Australia. Canadian Journal of Microbiology 53: 106–115.
Wang, B., Yu, Y. & Wang, L. 2014. Penicillium fusisporum and P. zhuangii, two new monoverticillate species with apical-swelling stipes of section Aspergilloides isolated from plant leaves in China. PLoS ONE 9: https://doi.org/10.1371/journal.pone.0101454.
Warcup, J.H. 1950. The soil-plate method for isolation of fungi from soil. Nature 166: 117–118.
Wolfgang, H., Volker, R. & Guenther, M. 2000. Fusarinines and dimerum acid, mono- and dihydroxamate siderophores from Penicillium chrysogenum, improve iron utilization by strategy I and strategy II plants. Biometals 13: 37–46.
Yadav, J., Verma, J.P., Yadav, S.K. & Tiwari, K.N. 2011. Effect of salt concentration and pH on inhabiting fungus Penicillium citrinum Thom. for solubilization of tricalcium phosphate. Microbiology Journal 1: 25–32.
Yamamoto, W., Maeda, M. & Oyasu, N. 1956. Studies on the Penicillium diseases occurring on cultivated plants I. Science reports of the Hyogo University of Agriculture 2: 23–28.
Yilmaz, N., Visagie, C.M., Houbraken, J., Frisvad, J.C. & Samson, R.A. 2014. Polyphasic taxonomy of the genus Talaromyces. Studies in Mycology 78: 175–341.
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