Abbasi, K. & Afzalinia, S. 2022. Identification of eight fungi isolated from potato golden cyst nematode from Iran. Plant Pathology Science 11(2): 22–31.
Abdollahi Aghdam, S. & Fotouhifar, K.B. 2017. Identification of some endophytic fungi of cherry trees (Prunus avium) in Iran. Iranian Journal of Plant Protection Science 48(1): 43–57.
Abreu, L.M., Moreira, G.M., Ferreira, D., Rodrigues-Filho, E. & Pfenning, L.H. 2014. Diversity of Clonostachys species assessed by molecular phylogenetics and MALDI-TOF mass spectrometry. Fungal Biology 118(12): 1004–1012. DOI: 10.1016/j.funbio.2014.10.001.
Alves, A., Crous, P.W., Correia, A. & Phillips, A.J.L. 2008. Morphological and molecular data reveal cryptic speciation in Lasiodiplodia theobromae. Fungal Diversity 28: 1–13. DOI: 10.1002/yea.1554.
Bao, D.F., Hyde, K.D., Maharachchikumbura, S.S.N., Perera, R.H., Thiyagaraja, V., Hongsanan, S., Wanasinghe, D.N., Shen, H.W., Tian, X.G., Yang, L.Q., Nalumpang, S. & Luo, Z.L. 2023. Taxonomy, phylogeny and evolution of freshwater Hypocreomycetidae (Sordariomycetes). Fungal Diversity 121(1): 1–94. DOI: 10.1007/s13225-023-00521-8.
Carling, D.E. & Sumner, D.R. 1992. Rhizoctonia. Pp. 157–165. In: Methods for research on soilborne phytopathogenic fungi (Singleton, L.L., Mihail, J.D. & Rush, C.M.; eds).
Carbone, I. & Kohn, L.M. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553–556. DOI: 10.1080/00275514.1999.12061051.
Ebrahimi, L. & Fotouhifar, K. 2016. Identification of some fungi accompanying the scab symptoms in Iran. Mycologia Iranica 3(1): 25–37. DOI: 10.22043/mi.2017.48716.1077.
Edler, D., Klein, J., Antonelli, A. & Silvestro, D. 2021. RaxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution 12: 373–377. DOI: 10.1111/2041- 210X.13512.
Ghahremani, F., Khodaparast, S.A., Pourmoghaddam, M.J. & Mousanejad, S. 2025. Diaporthe species associated with Blackberry and Blueberry from Guilan Province, Iran. Mycologia Iranica 12(1): 43–57. DOI: 10.22092/mi.2025.368317.1306.
Han, P., Zhang, X., Xu, D., Zhang, B., Lai, D. & Zhou, L. 2020. Metabolites from Clonostachys Fungi and Their Biological Activities. Journal of Fungi 6: 229. DOI: 10.3390/jof6040229.
He, S., Thiyagaraja, V., Bhunjun, C.S., Chomnunti, P., Dissanayake, L.S., Jayawardena, R.S., ... et al. 2025. Morphology and multi-gene phylogeny reveal three new species of Clonostachys and two combinations of Sesquicillium (Bionectriaceae, Hypocreales) from Xizang, China. MycoKeys 115: 43–66. DOI: 10.3897/mycokeys.115.139757.
Hou, L.W., Giraldo, A., Groenewald, J.Z., Rämä, T., Summerbell, R.C., Huang, G.Z., Cai, L. & Crous, P.W. 2023. Redisposition of acremonium-like fungi in Hypocreales. Studies in Mycology 105: 23–203. DOI: 10.3114/sim.2023.105.02.
Hyde, K.D., Noorabadi, M.T., Thiyagaraja, V., Mq, H., Johnston, PR., Wijesinghe, S.N., Armand, A., ... et al. 2024. The 2024 Outline of Fungi and fungus-like taxa. Mycosphere 15(1): 5146–6239. DOI: 10.5943/mycosphere/15/1/25.
Katoh, K., Rozewicki, J. & Yamada, K.D. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20(4): 1160–1166. DOI: 10.1093/bib/bbx108.
Kapeua-Ndacnou, M., de Abreu, L.M., de Macedo, D.M., da Nóbrega, T.F., Pereira, C.M., Evans, H.C. & Barreto, R.W. 2023. Assessing the biocontrol potential of Clonostachys species isolated as endophytes from Coffea species and as mycoparasites of Hemileia rusts of coffee in Africa. Journal of Fungi 9(2): 248. DOI: 10.3390/jof9020248.
Kumar, S., Stecher, G. & Tamura, K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33 1870–1874. DOI: 10.1093/molbev/msw054.Epub.
Lechat, C. & Fournier, J. 2018. Clonostachys spinulosispora (Hypocreales, Bionectriaceae), a new species on palm from French Guiana. Ascomycete.org 10: 127–130.
Lechat, C., Fournier, J., Chaduli, D., Lesage-Meessen, L. & Favel, A. 2019. Clonostachys saulensis (Bionectriaceae, Hypocreales), a new species from French Guiana. Ascomycete.org 11: 65–68.
Leslie, J.F. & Summerell, B.A. 2006. The Fusarium Laboratory Manual. Blackwell Publishing. Ames, IA.
Maddison, W.P. & Maddison, D.R. 2015. Mesquite: a modular system for evolutionary analysis. Version 3.10. http://mesquiteproject.org.
Mahmoudi, H., Amini, A., Mirzaee, M.R., Sadeghi, H. & Tavakkoli, G.R. 2018. Clonostachys rosea, a new and promising entomopathogenic fungus infecting pupa of jujube fruit fly, Carpomya vesuviana. Mycologia Iranica 5(1): 43–49. DOI: 10.22043/mi.2019.118753.
Moreira, G.M., Abreu, L.M., Carvalho, V.G., Schroers, H.J. & Pfenning, L.H. 2016. Multilocus phylogeny of Clonostachys subgenus Bionectria from Brazil and description of Clonostachys chloroleuca sp. nov. Mycological Progress 15: 1031–1039. DOI: 10.1007/s11557-016-1224-6.
Onkar, D. & James, B.S. 1985. Basic Plant Pathology Methods. Boca Raton, FL: CRC Press. 306 pp.
O’Donnell, K., Kistler H.C., Cigelnik E. & Ploetz R.C. 1998. Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Sciences of the United States of America 95(5): 2044–2049. DOI: 10.1073/pnas.95.5.2044.
Preedanon, S., Suetrong, S., Srihom, C., Somrithipol, S., Kobmoo, N., Saengkaewsuk, S., Srikitikulchai, P., Klaysuban, A., Nuankaew, S., Chuaseeharonnachai, C., Chainuwong, B., Muangsong, C., Zhang, Z.F., Cai, L. & Boonyuen, N. 2023. Eight novel cave fungi in Thailand’s Satun Geopark. Fungal Systematics and Evolution 12: 1–30. DOI: 10.3114/fuse.2023.12.01.
Rossman, A.Y., McKemy, J.M., Pardo-Schultheiss, R.A. & Schroers, H.J. 2001. Molecular studies of the Bionectriaceae using large subunit rDNA sequences. Mycologia 93: 100–110. DOI: 10.1080/00275514.2001.12061283.
Rossman, A.Y, Seifert, K.A., Samuels, G.J., Minnis, A.M., Schroers, H.J., Lombard, L., Crous, P.W., Põldmaa, K., Cannon, P.F., Summerbell, R.C., Geiser, D.M., Zhuang, W.Y., Hirooka, Y., Herrera, C., Salgado-Salazar, C. & Chaverri, P. 2013. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales) proposed for acceptance and rejection. IMA Fungus 4: 41–51. DOI: 10.5598/imafungus.2013.04.01.05.
Schroers, H.J. 2001. A monograph of Bionectria ascomycota, Hypocreales, Bionectriaceae and its Clonostachys anamorphs. Studies in Mycology 46: 1–214.
Singh, S. & Mathur, N. 2010. In vitro studies of antagonistic fungi against the root-knot nematode, Meloidogyne incognita. Biocontrol Science and Technology 20(3): 275–282. DOI: 10.1080/09583150903484318.
Tan, Y.P. & Shivas, R.G. 2023. Nomenclatural novelties. Index of Australian Fungi 5: 1–12.
Torcato, C., Gonalves, M.F.M, Rodríguez-Gálvez, E. & Alves, A. 2020. Clonostachys viticola sp. nov., a novel species isolated from Vitis vinifera. International Journal of Systematic and Evolutionary Microbiology 70: 4321–4328. DOI: 10.1099/ijsem.0.004286.
Vu, D., Groenewald, M., De Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J.Z., Cardinali, G., Houbraken, J., Boekhout, T., Crous, P.W., Robert, V. & Verkley, G.J.M. 2019. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135–154. DOI: 10.1016/j.simyco.2018.05.001.
White, T.J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal genes for phylogenetics. Pp: 315–322. In: PCR protocols: a guide to methods and applications (Gelfand, M., Sninsky, J.I. & White, T.J.; eds). Academic Press, New York, DOI: 10.1016/B978-0-12-372180-8.50042-1.
Wang, Y., Tang, D.X., Luo, R., Wang, Y.B., Thanarut, C., Dao, V.M. & Yu, H. 2023. Phylogeny and systematics of the genus Clonostachys. Frontiers in Microbiology 14: 1117753. DOI: 10.3389/fmicb.2023.1117753.
Yao, H., Liu, K., Peng, L., Huang, T., Shi, J., Sun, B. & Zou, J. 2024. Clonostachys rosea, a Pathogen of Brown Rot in Gastrodia elata in China. Biology 13(9): 730. DOI: 10.3390/biology13090730.
Zeng, Z.Q. & Zhuang, W.Y. 2022. Three New Species of Clonostachys (Hypocreales, Ascomycota) from China. Journal of Fungi 8(10): 1027. DOI: 10.3390/jof8101027.
Zhao, L., Groenewald, J.Z., Hernández-Restrepo, M., Schroers, H.J. & Crous, P.W. 2023. Revising Clonostachys and allied genera in Bionectriaceae. Studies in Mycology 105: 204–65. DOI: 10.3114/sim.2023.105.03.
Zhao, L., Groenewald, J.Z., Hou, L.W., Summerbell, R.C. & Crous, P.W. 2025. Bionectriaceae: a poorly known family of hypocrealean fungi with major commercial potential. Studies in Mycology 111: 115–198. DOI: 10.3114/sim.2025.111.04.
Zhang, Y.J., Zhang, S., Liu, X., Wen, H.A. & Wang, M. 2010. A simple method of genomic DNA extraction suitable for analysis of bulk fungal strains. Letters in Applied Microbiology 51(1): 114–118. DOI: 10.1111/j.1472-765X.2010.02867.x.
Zhang, Z.Y., Li, X., Chen, W.H., Liang, J.D. & Han, Y.F. 2023. Culturable fungi from urban soils in China II, with the description of 18 novel species in Ascomycota (Dothideomycetes, Eurotiomycetes, Leotiomycetes and Sordariomycetes). MycoKeys 98: 167–220. DOI: 10.3897/mycokeys.98.102816.
Zheng, C.J., Kim, C.J., Bae, K.S., Kim, Y.H. & Kim, W.G. 2006. Bionectins A-C, epidithiodioxopiperazines with anti-MRSA activity, from Bionectra byssicola F120. Journal of Natural Products 69(12): 1816–1819. DOI: 10.1021/np060348t.