Ariyawansa, H.A. et al. 2015. Fungal diversity notes 111–252 - taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 75(1): 27–274.
Ayyadurai, N., Kirubakaran, S.I., Srisha, S. & Sakthivel, N. 2005. Biological and molecular variability of Sarocladium oryzae, the sheath rot pathogen of rice (Oryza sativa L.). Current Microbiology 50(6): 319–323.
Bishop, D.L., Levine, H.G., Kropp, B.R. & Anderson, A.J. 1997. Seedborne fungal contamination: consequences in space-grown wheat. Phytopathology 87(11): 1125–1133.
Charlton, N.D., Craven, K.D., Mittal, S., Hopkins, A.A. & Young, C.A. 2012. Epichloë canadensis, a new interspecific epichloid hybrid symbiotic with Canada wildrye (Elymus canadensis). Mycologia 104(5): 1187–1199.
Cheewangkoon, R., Groenewald, J., Summerell, B., Hyde, K., To-Anun, C. & Crous, P.W. 2009. Myrtaceae, a cache of fungal biodiversity. Persoonia 23(1): 55–85.
Comby, M., Gacoin, M., Robineau, M., Rabenoelina, F., Ptas, S., Dupont, J., Profizi, C. & Baillieul, F. 2017. Screening of wheat endophytes as biological control agents against Fusarium head blight using two different in vitro tests. Microbiological Research 202: 11–20.
Crous, P.W., Carris, L.M., Giraldo, A., Groenewald, J.Z., Hawksworth, D.L., Hemández-Restrepo, M., Jaklitsch, W.M., Lebrun, M.-H., Schumacher, R.K. & Stielow, J.B. 2015. The genera of fungi-fixing the application of the type species of generic names-G 2: Allantophomopsis, Latorua, Macrodiplodiopsis, Macrohilum, Milospium, Protostegia, Pyricularia, Robillarda, Rotula, Septoriella, Torula, and Wojnowicia. IMA fungus 6(1): 163–198.
Crous, P.W., Petrini, O., Marais, G.F., Pretorius, Z.A. & Rehder, F. 1995. Occurrence of fungal endophytes in cultivars of Triticum aestivum in South Africa. Mycoscience 36(1): 105–111.
Crous, P.W., Shivas, R.G., Quaedvlieg, W.v., Van der Bank, M., Zhang, Y., Summerell, B., Guarro, J., Wingfield, M., Wood, A. & Alfenas, A. 2014. Fungal Planet description sheets: 214–280. Persoonia 32(1): 184–306.
Crous, P.W., Slippers, B., Wingfield, M.J., Rheeder, J., Marasas, W.F., Philips, A.J., Alves, A., Burgess, T., Barber, P. & Groenewald, J.Z. 2006. Phylogenetic lineages in the Botryosphaeriaceae. Studies in Mycology 55(1): 235–253.
Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9(8):772–772.
de Bary, A. 1886. Ueber einige Sclerotinien und Sclero. Botanische Zeitung 44: 377–474.
Ebrahimi, L. & Fotouhifar, K. 2016. Identification of some fungi accompanying the scab symptoms in Iran. Mycologia Iranica 3(1): 25–37.
Ershad, D. 2022. Fungi and Fungal Analogues of Iran. 4th. edn., Iranian Research Institute of Plant Protection: Tehran, Iran.
Fincher, R.-M.E., Fisher, J.F., Lovell, R.D., Newman, C.L., Espinel-Ingroff, A. & Shadomy, H.J. 1991. Infection due to the fungus Acremonium (Cephalosporium). Medicine 70(6): 398–409.
Florea, S., Schardl, C.L. & Hollin, W. 2015. Detection and isolation of Epichloë species, fungal endophytes of grasses. Current Protocols in Microbiology 38(1): 19A.1.1-19A.1.24.
Gams, W. & Hawksworth, D.L. 1975. The identity of Acrocylindrium oryzae Sawada and a similar fungus causing sheath-rot of rice. Kavaka 3: 57–61.
Giraldo, A., Gené, J., Sutton, D., Madrid, H., De Hoog, G., Cano, J., Decock, C., Crous, P.W. & Guarro, J. 2015. Phylogeny of Sarocladium (Hypocreales). Persoonia 34(1): 10–24.
Guindon, S. & Gascuel, O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52(5): 696–704.
Hormazabal, E. & Piontelli, E. 2009. Endophytic fungi from Chilean native gymnosperms: antimicrobial activity against human and phytopathogenic fungi. World Journal of Microbiology and Biotechnology 25(5): 813–819.
Huelsenbeck, J.P. & Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17(8): 754–755.
Index fungorum. 2023. http://www.indexfungorum.org/ Names/Names.asp.
Jayasiri, S., Wanasinghe, D., Ariyawansa, H., Jones, E., Kang, J., Promputtha, I., Bahkali, A., Bhat, D., Camporesi, E. & Hyde, K. 2015. Two novel species of Vagicola (Phaeosphaeriaceae) from Italy. Mycosphere 6(6): 716–728.
Joseph, B. & Priya, R.M. 2011. Bioactive compounds from endophytes and their potential in pharmaceutical effect: a review. American Journal of Biochemistry and Molecular Biology 1(3): 291–309.
Kang, Y., Ji, Y.-L., Zhang, C.-W. & Wang, Z.-W. 2011. Neotyphodium sinicum, from several Roegneria species throughout China, provides insights into the evolution of asexual endophytes. Symbiosis 54(1): 37–45.
Katoh, K., Rozewicki, J. & Yamada, K.D. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20(4): 1160–1166.
Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. 2008. Ainsworth and Bisby's Dictionary of the Fungi. CABI Publishing.
Kwon, S.-I. & Anderson, A. 2001. Differential production of superoxide dismutase and catalase isozymes during infection of wheat by a Fusarium proliferatum-like fungal isolate. Physiological and Molecular Plant Pathology 58(2): 73–81.
Larran, S., Perelló, A., Simón, M.R. & Moreno, V. 2007. The endophytic fungi from wheat (Triticum aestivum L.). World Journal of Microbiology and Biotechnology 23(4): 565–572.
Leuchtmann, A. & Clay, K. 1993. Nonreciprocal compatibility between Epichloë typhina and four host grasses. Mycologia 85(2): 157–163.
Leuchtmann, A. & Oberhofer, M. 2013. The Epichloë endophytes associated with the woodland grass Hordelymus europaeus including four new taxa. Mycologia 105(5): 1315–1324.
Leuchtmann, A., Schmidt, D. & Bush, L. 2000. Different levels of protective alkaloids in grasses with stroma-forming and seed-transmitted Epichloë/ Neotyphodium endophytes. Journal of Chemical Ecology 26(4): 1025–1036.
Li, W., Bhat, D., Camporesi, E., Tian, Q., Wijayawardene, N., Dai, D., Phookamsak, R., Chomnunti, P., Bahkali, A. & Hyde, K. 2015. New asexual morph taxa in Phaeosphaeriaceae. Mycosphere 6(6): 681–708.
Liu, D., Coloe, S., Baird, R. & Pedersen, J. 2000. Rapid mini-preparation of fungal DNA for PCR. Journal of Clinical Microbiology 38(1): 471–471.
Liu, J.K. et al. 2015. Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species. Fungal Diversity 72(1): 1–197.
Liu, X., Guo, Z. & Huang, G. 2017. Sarocladium brachiariae sp. nov., an endophytic fungus isolated from Brachiaria brizantha. Mycosphere 8(7): 827–834.
Maire, M. 1906. Contributions à l'étude de la flore mycologique de l'Afrique du Nord. Bulletin de la Société Botanique de France 53(Suppl. 2): CLXXX-CCXV.
Marin-Felix, Y., Hernández-Restrepo, M., Iturrieta-González, I., García, D., Gené, J., Groenewald, J.Z., Cai, L., Chen, Q., Quaedvlieg, W. & Schumacher, R. 2019. Genera of phytopathogenic fungi: GOPHY 3. Studies in Mycology 94: 1–124.
Marshall, D., Tunali, B. & Nelson, L. 1999. Occurrence of fungal endophytes in species of wild Triticum. Crop Science 39(5): 1507–1512.
Masigol, H., Rezakhani, F., Pourmoghaddam, M.J., Khodaparast, S.A. & Grossart, H.-P. 2022. The introduction of two new species of aquatic fungi from Anzali Lagoon, Northern Iran. Diversity 14(10): 889. https://doi.org/10.3390/d14100889.
Mehrabi, M., Hemmati, R., Vasilyeva, L.N. & Trouillas, F.P. 2016. Diatrypella macrospora sp. nov. and new records of diatrypaceous fungi from Iran. Phytotaxa 252(1): 43–55.
Miller, M.A., Pfeiffer, W. & Schwartz, T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Pp. 1–8. In: Proceedings of the Gateway Computing Environments Workshop (GCE), Nov. 14, 2010. New Orleans, Louisiana.
Moon, C., Craven, K., Leuchtmann, A., Clement, S. & Schardl, C. 2004. Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses. Molecular Ecology 13(6): 1455–1467.
Mucciarelli, M., Scannerini, S., Bertea, C. & Maffei, M. 2003. In vitro and in vivo peppermint (Mentha piperita) growth promotion by nonmycorrhizal fungal colonization. New Phytologist 158(3):
579–591.
Naeemi, S., Hedjaroude, G.A., Okhovat, S., Khosravi, V. & Padasht, F. 2002. Introduction of the fungi associated with sheath rot of rice in Mazandeeran and Gilan Provinces. Proceedings of the 15th. Iranian Plant Protection Congress, Vol. II, 7–11 Sept., Kermanshah, Iran: 46.
Nan, Z.B. & Li, C.J. 2001. Neotyphodium in native grasses in China and observations on endophyte/host interactions. Pp. 41–50. In: Paul, V.H. & Dapprich, P.D. (eds), Fourth International Neotyphodium/Grass Interactions Symposium. Fachbereich, Agrarwirtshaft, Soest, Germany.
Oberhofer, M. & Leuchtmann, A. 2012. Genetic diversity in epichloid endophytes of Hordelymus europaeus suggests repeated host jumps and interspecific hybridizations. Molecular Ecology 21(11): 2713–2726.
Ofek-Lalzar, M., Gur, Y., Ben-Moshe, S., Sharon, O., Kosman, E., Mochli, E. & Sharon, A. 2016. Diversity of fungal endophytes in recent and ancient wheat ancestors Triticum dicoccoides and Aegilops sharonensis. FEMS Microbiology Ecology 92(10): DOI: 10.1093/femsec/fiw152.
Pádua, A.P.S.L.D., Freire, K.T.L.D.S., Oliveira, T.G.L.D., Silva, L.F.D., Araújo-Magalhães, G.R., Agamez-Montalvo, G.S., Silva, I.R.D., Bezerra, J.D.P. & Souza-Motta, C.M.D. 2018. Fungal endophyte diversity in the leaves of the medicinal plant Myracrodruon urundeuva in a Brazilian dry tropical forest and their capacity to produce L-asparaginase. Acta Botanica Brasilica 33(1): 39–49.
Park, J.Y. & Sprague, R. 1953. Studies on some Selenophoma species on Gramineae. Mycologia 45(2): 260–275.
Perdomo, H., Sutton, D., García, D., Fothergill, A., Cano, J., Gené, J., Summerbell, R., Rinaldi, M. & Guarro, J. 2011. Spectrum of clinically relevant Acremonium species in the United States. Journal of Clinical Microbiology 49(1): 243–256.
Petrini, O. 1991. Fungal endophytes of tree leaves. Pp. 179–187. In: Andrews, J.H. & Hirano, S.S. (eds), Microbial Ecology of Leaves. Springer Verlag, New York.
Pimentel, M.R., Molina, G., Dionísio, A.P., Maróstica Junior, M.R. & Pastore, G.M. 2011. The use of endophytes to obtain bioactive compounds and their application in biotransformation process. Biotechnology Research International: 1–11.
Poling, S.M., Wicklow, D.T., Rogers, K.D. & Gloer, J.B. 2008. Acremonium zeae, a protective endophyte of maize, produces dihydroresorcylide and 7-hydroxydihydroresorcylides. Journal of Agricultural and Food Chemistry 56(9):
3006–3009.
Quaedvlieg, W., Verkley, G., Shin, H.-D., Barreto, R., Alfenas, A., Swart, W., Groenewald, J. & Crous, P.W. 2013. Sizing up septoria. Studies in Mycology 75(1): 307–390.
Rambaut, A. 2012. FigTree version 1.4.0. http://tree.bio.ed.ac.uk/software/figtree.
Rannala, B. & Yang, Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43(3): 304–311.
Rayner, R. 1970. A Mycological Colour Chart. Commonwealth Mycological Institute and British Mycological Society. Kew, Surrey, UK.
Rezakhani, F., Khodaparast, S.A., Masigol, H., Roja-Jimenez, K., Grossart, H.-P. & Bakhshi, M. 2019. A preliminary report of aquatic hyphomycetes isolated from Anzali lagoon (Gilan province, North of Iran). Rostaniha 20(2): 123–143.
Rodriguez, R.J., Henson, J., Van Volkenburgh, E., Hoy, M., Wright, L., Beckwith, F., Kim, Y.-O. & Redman, R.S. 2008. Stress tolerance in plants via habitat-adapted symbiosis. The ISME Journal 2(4): 404–416.
Saikkonen, K., Ahlholm, J., Helander, M., Lehtimäki, S. & Niemeläinen, O. 2000. Endophytic fungi in wild and cultivated grasses in Finland. Ecography 23(3): 360–366.
Sánchez Márquez, M., Bills, G.F. & Zabalgogeazcoa, I. 2008. Diversity and structure of the fungal endophytic assemblages from two sympatric coastal grasses. Fungal Diversity 33: 87–100.
Schoch, C.L. et al. 2014. Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database: 1–21.
Singh, R. & Dubey, A. 2015. Endophytic actinomycetes as emerging source for therapeutic compounds. Indo Global Journal of Pharmaceutical Sciences 5(2): 106–116.
Soreng, R.J., Peterson, P.M., Romaschenko, K., Davidse, G., Zuloaga, F.O., Judziewicz, E.J., Filgueiras, T.S., Davis, J.I. & Morrone, O. 2015. A worldwide phylogenetic classification of the Poaceae (Gramineae). Journal of Systematics and Evolution 53(2): 117–137.
Spooner, B. & Kemp, S. 2005. Epichloë in Britain. Mycologist 19(2): 82–87.
Sprague, R. 1949. Selenophoma spot, a new wheat disease for North America. Phytopathology 39(1): 23.
Sprague, R. 1950. Diseases of cereals and grasses in North America. The Ronald Press Company, New York, USA.
Sprague, R. & Johnson, A.G. 1940. Selenophoma on grasses. Mycologia 32(3): 415.
Stamatakis, A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30(9): 1312–1313.
Strobel, G. & Daisy, B. 2003. Bioprospecting for microbial endophytes and their natural products. Microbiology and Molecular Biology Reviews 67(4): 491–502.
Summerbell, R., Gueidan, C., Schroers, H., De Hoog, G., Starink, M., Rosete, Y.A., Guarro, J. & Scott, J. 2011. Acremonium phylogenetic overview and revision of Gliomastix, Sarocladium, and Trichothecium. Studies in Mycology 68(1):
139–162.
Sutton, B.C. 1980. The Coelomycetes. Fungi imperfecti with pycnidia, acervuli and stromata. Commonwealth Mycological Institute.
Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30(12): 2725–2729.
Tan, R.X. & Zou, W.X. 2001. Endophytes: a rich source of functional metabolites. Natural Product Reports 18(4): 448–459.
Thambugala, K., Wanasinghe, D., Phillips, A., Camporesi, E., Bulgakov, T., Phukhamsakda, C., Ariyawansa, H., Goonasekara, I., Phookamsak, R. & Dissanayake, A. 2017. Mycosphere notes 1–50: grass (Poaceae) inhabiting Dothideomycetes. Mycosphere 8(4): 697–796.
Tunali, B., Shelby, R., Morgan-Jones, G. & Kodan, M. 2000. Endophytic fungi and ergot alkaloids in native Turkish grasses. Phytoparasitica 28(4): 375–377.
van Nieuwenhuijzen, E.J., Houbraken, J.A., Meijer, M., Adan, O.C. & Samson, R.A. 2016. Aureobasidium melanogenum: a native of dark biofinishes on oil treated wood. Antonie Van Leeuwenhoek 109(5): 661–683.
Vanterpool, T. 1947. Selenophoma linicola sp. nov. on Flax in Saskatchewan. Mycologia 39(3): 341–348.
Vu, D., Groenewald, M., De Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J.Z., Cardinali, G. & Houbraken, J. 2019. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92(1):
135–154.
Wanasinghe, D.N., Phukhamsakda, C., Hyde, K.D., Jeewon, R., Lee, H.B., Gareth Jones, E., Tibpromma, S., Tennakoon, D.S., Dissanayake, A.J. & Jayasiri, S.C. 2018. Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae. Fungal Diversity 89(1): 1–236.
White, J.F. 1987. Widespread distribution of endophytes in the Poaceae. Plant Disease 71(4): 340–342.
White, T.J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315–322. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, J. (eds), PCR Protocols, a Guide to Methods and Applications. Academic Press, San Diego.
Wicklow, D.T., Shoshannah, R., Deyrup, S.T. & Gloer, J.B. 2005. A protective endophyte of maize: Acremonium zeae antibiotics inhibitory to Aspergillus flavus and Fusarium verticillioides. Mycological Research 109(5): 610–618.
Yanagida, N., Baba, N., Tajimi, A., Ueda, M., Noishiki, Y., Mori, K., Ishiguro, T. & Nakamura, T. 2004. Variation and distribution of endophytic fungus, Neotyphodium typhinum, isolated from Agropyron ciliare var. minus (aokamojigusa) around the coast land of Lake Biwa. Grassland Science 50: 174–179.
Yanagida, N., Irie, T., Tanaka, E., Teramoto, C., Kuwabara, K. & Tajimi, A. 2005. New choke diseases and their molecular phylogenetic analysis in Agropyron ciliare var. minus and Agropyron tsukushiense var. transiens. Mycologia 97(6):
1287–1291.
Yeh, Y.-H. & Kirschner, R. 2014. Sarocladium spinificis, a new endophytic species from the coastal grass Spinifex littoreus in Taiwan. Botanical Studies 55(1): 1–6.
Youssef, N.N. & Dugan, F.M. 2000. Location of an endophytic Neotyphodium sp. within various leaf tissues of wild barley (Hordeum brevisubulatum subsp. violaceum). Plant Genetic Resources Newsletter 124: 17–19.
Yurlova, N., De Hoog, G. & Van den Ende, A. 1999. Taxonomy of Aureobasidium and allied genera. Studies in Mycology 43: 63–69.
Yurlova, N., Uijthof, J. & De Hoog, G. 1996. Distinction of species in Aureobasidium and related genera by PCR-ribotyping. Antonie van Leeuwenhoek 69(4): 323–329.
Zalar, P., Gostinčar, C., De Hoog, G., Uršič, V., Sudhadham, M. & Gunde-Cimerman, N. 2008. Redefinition of Aureobasidium pullulans and its varieties. Studies in Mycology 61: 21–38.
Zhang, Z., Schwartz, S., Wagner, L. & Miller, W. 2000. A greedy algorithm for aligning DNA sequences. Journal of Computational Biology 7(1-2): 203–214.
)
